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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038238 through 18771 annotations produced 1 hits



(CG14854):

Annotation Number : CG14854
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038238
Gbrowse : chr3R:10384982-10386693 (-) // 100.0 //
Probeset : 1623709_at
Accessions : protein= NP_001097791;, nucleotide= NM_001104321;
FlyMine data for FBgn0038238.
VDRC has 3 RNAi stocks for FBgn0038238 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20Down
Head13 14 of 4 1.70Up
Eye6 10 of 4 0.84None
Thoracicoabdominal ganglion3 10 of 4 0.40None
Salivary gland13 30 of 4 1.61None
Crop17 04 of 4 2.20Up
Midgut7 10 of 4 0.90None
Tubule3 00 of 4 0.40Down
Hindgut13 33 of 4 1.60None
Heart6 01 of 4 0.81None
Fat body8 10 of 4 1.05None
Ovary2 00 of 4 0.40Down
Testis4 00 of 4 0.50Down
Male accessory glands70 14 of 4 8.70Up
Virgin spermatheca8 03 of 4 1.10None
Mated spermatheca10 13 of 4 1.33None
Adult carcass26 24 of 4 3.30Up
Larval CNS1 10 of 4 0.22Down
Larval Salivary gland8 00 of 4 1.01None
Larval midgut5 10 of 4 0.72None
Larval tubule4 10 of 4 0.50None
Larval hindgut5 01 of 4 0.64None
Larval fat body10 41 of 4 1.30None
Larval trachea5 22 of 4 0.73None
Larval carcass9 10 of 4 1.16None
S2 cells (growing)1 10 of 4 0.24Down
Whole fly8 12 of 4

Looking for FBgn0038238. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime