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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038239 through 18771 annotations produced 1 hits



(CG14850):

Annotation Number : CG14850
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038239
Gbrowse : chr3R:10386703-10387180 (+) // 100.0 //
Probeset : 1638815_at
Accessions : protein= NP_650371;, nucleotide= NM_142114;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038239.
BioGrid reports that CG14850 interacts with CG16747 CG16983 CG2146 CG5787 CG6016 CG6860 CG7450 CG9415 .
VDRC has 3 RNAi stocks for FBgn0038239 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 1.20None
Head6 ± 10 of 4 1.40None
Eye2 ± 10 of 4 0.58None
Thoracicoabdominal ganglion2 ± 00 of 4 0.60None
Salivary gland19 ± 01 of 4 4.26Up
Crop6 ± 10 of 4 1.30None
Midgut17 ± 11 of 4 3.70Up
Tubule3 ± 00 of 4 0.80Down
Hindgut5 ± 10 of 4 1.20None
Heart3 ± 10 of 4 0.79None
Fat body12 ± 42 of 4 2.66Up
Ovary3 ± 10 of 4 0.80None
Testis2 ± 00 of 4 0.50None
Male accessory glands8 ± 31 of 4 1.90None
Virgin spermatheca8 ± 00 of 4 1.78Up
Mated spermatheca7 ± 11 of 4 1.51None
Adult carcass6 ± 10 of 4 1.40None
Larval CNS6 ± 21 of 4 1.45None
Larval Salivary gland2735 ± 5014 of 4585.10Up
Larval midgut8 ± 10 of 4 1.88None
Larval tubule3 ± 10 of 4 0.70None
Larval hindgut6 ± 10 of 4 1.43None
Larval fat body12 ± 12 of 4 2.70Up
Larval trachea5 ± 10 of 4 1.09None
Larval carcass13 ± 13 of 4 2.84Up
S2 cells (growing)6 ± 20 of 4 1.49None
Whole fly4 ± 10 of 4

Looking for FBgn0038239. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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