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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038241 through 18771 annotations produced 1 hits



(CG8087):

Annotation Number : CG8087
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038241
Gbrowse : chr3R:10390043-10390504 (-) // 100.0 //
Probeset : 1623467_at
Accessions : protein= NP_731917;, nucleotide= NM_169585;
FlyMine data for FBgn0038241.
VDRC has 1 RNAi stocks for FBgn0038241 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20None
Head1 ± 00 of 4 0.30None
Eye2 ± 00 of 4 0.38None
Thoracicoabdominal ganglion4 ± 10 of 4 0.70None
Salivary gland10 ± 30 of 4 1.75None
Crop6 ± 20 of 4 1.00None
Midgut5 ± 30 of 4 0.90None
Tubule3 ± 00 of 4 0.50Down
Hindgut3 ± 10 of 4 0.60None
Heart2 ± 11 of 4 0.37None
Fat body10 ± 40 of 4 1.62None
Ovary3 ± 10 of 4 0.60None
Testis2 ± 00 of 4 0.30None
Male accessory glands7 ± 30 of 4 1.20None
Virgin spermatheca6 ± 20 of 4 1.06None
Mated spermatheca6 ± 20 of 4 1.00None
Adult carcass7 ± 20 of 4 1.30None
Larval CNS2 ± 20 of 4 0.40None
Larval Salivary gland8903 ± 5524 of 41441.78Up
Larval midgut8 ± 30 of 4 1.42None
Larval tubule3 ± 10 of 4 0.50None
Larval hindgut4 ± 00 of 4 0.68None
Larval fat body7 ± 60 of 4 1.30None
Larval trachea29 ± 471 of 4 4.76None
Larval carcass3 ± 10 of 4 0.62None
S2 cells (growing)2 ± 10 of 4 0.43None
Whole fly6 ± 20 of 4

Looking for FBgn0038241. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime