Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038247 through 18771 annotations produced 1 hits



Cad88C (Cad88C):

Annotation Number : CG3389
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038247
Gbrowse : chr3R:10460474-10467334 (+) // 100.0 //
Probeset : 1637488_at
Accessions : protein= NP_731930;, nucleotide= NM_169594;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0038247.
Homophila reports that CG3389 is a close match (1e-12) to human gene DSG1 (NP_001933), a gene associated with Keratosis palmoplantaris striata I, 148700 (3).
TRiP has 1 RNAi stocks for FBgn0038247 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038247 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.40None
Head1 ± 00 of 4 0.20None
Eye5 ± 11 of 4 0.65None
Thoracicoabdominal ganglion5 ± 10 of 4 0.60None
Salivary gland11 ± 30 of 4 1.22None
Crop6 ± 10 of 4 0.70None
Midgut3 ± 10 of 4 0.30None
Tubule2 ± 00 of 4 0.20Down
Hindgut8 ± 20 of 4 0.90None
Heart2 ± 11 of 4 0.29None
Fat body3 ± 20 of 4 0.41None
Ovary11 ± 13 of 4 1.20None
Testis2 ± 00 of 4 0.30None
Male accessory glands2 ± 00 of 4 0.30None
Virgin spermatheca2 ± 00 of 4 0.25None
Mated spermatheca3 ± 10 of 4 0.35None
Adult carcass3 ± 10 of 4 0.40None
Larval CNS4 ± 10 of 4 0.44None
Larval Salivary gland3 ± 10 of 4 0.39None
Larval midgut4 ± 20 of 4 0.47None
Larval tubule5 ± 10 of 4 0.60None
Larval hindgut3 ± 00 of 4 0.34None
Larval fat body8 ± 40 of 4 0.90None
Larval trachea7 ± 22 of 4 0.88None
Larval carcass5 ± 20 of 4 0.65None
S2 cells (growing)4 ± 10 of 4 0.51None
Whole fly9 ± 22 of 4

Looking for FBgn0038247. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime