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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038250 through 18771 annotations produced 1 hits



(CG3505):

Annotation Number : CG3505
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038250
Gbrowse : chr3R:10483192-10484950 (+) // 100.0 //
Probeset : 1636410_at
Accessions : protein= NP_650380;, nucleotide= NM_142123;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0038250.
BDGP gene expression has embryonic in situ data for CG3505: 11 pix of staining in 2 body parts.
Homophila reports that CG3505 is a close match (5e-11) to human gene EMSP1;KLK4;PRSS17 (NP_004908), a gene associated with Amelogenesis imperfecta, pigmented hypomaturation type, 204700 (3).
VDRC has 1 RNAi stocks for FBgn0038250 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 24 of 4 0.30Down
Head367 ± 44 of 4 5.30Up
Eye177 ± 114 of 4 2.56Up
Thoracicoabdominal ganglion14 ± 11 of 4 0.20Down
Salivary gland109 ± 174 of 4 1.59None
Crop200 ± 94 of 4 2.90Up
Midgut1 ± 00 of 4 0.00Down
Tubule11 ± 00 of 4 0.20Down
Hindgut139 ± 34 of 4 2.00Up
Heart484 ± 334 of 4 7.01Up
Fat body414 ± 424 of 4 5.99Up
Ovary4 ± 20 of 4 0.10Down
Testis9 ± 30 of 4 0.10Down
Male accessory glands6 ± 20 of 4 0.10Down
Virgin spermatheca373 ± 314 of 4 5.40Up
Mated spermatheca390 ± 394 of 4 5.66Up
Adult carcass354 ± 64 of 4 5.10Up
Larval CNS3 ± 20 of 4 0.05Down
Larval Salivary gland15 ± 12 of 4 0.23Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule13 ± 10 of 4 0.20Down
Larval hindgut34 ± 44 of 4 0.50Down
Larval fat body1141 ± 1174 of 416.50Up
Larval trachea130 ± 84 of 4 1.88Up
Larval carcass662 ± 584 of 4 9.58Up
S2 cells (growing)83 ± 24 of 4 1.22Up
Whole fly69 ± 34 of 4

Looking for FBgn0038250. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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