FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038256 through 18771 annotations produced 1 hits

(CG7530):

Annotation Number : CG7530
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038256
Gbrowse : chr3R:10550471-10557231 (-) // 100.0 //
Probeset : 1628081_s_at
Accessions : protein= NP_650387; /// NP_731939; /// NP_731940;, nucleotide= NM_142130; /// NM_169599; /// NM_169600;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0038256.
TRiP has 1 RNAi stocks for FBgn0038256 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038256 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	287 ± 5	4 of 4	0.60	Down
Head	505 ± 35	4 of 4	1.10	None
Eye	334 ± 34	4 of 4	0.70	Down
Thoracicoabdominal ganglion	336 ± 9	4 of 4	0.70	Down
Salivary gland	86 ± 2	4 of 4	0.18	Down
Crop	1768 ± 55	4 of 4	3.70	Up
Midgut	82 ± 2	4 of 4	0.20	Down
Tubule	341 ± 23	4 of 4	0.70	Down
Hindgut	459 ± 28	4 of 4	1.00	None
Heart	993 ± 30	4 of 4	2.09	Up
Fat body	1108 ± 33	4 of 4	2.33	Up
Ovary	708 ± 20	4 of 4	1.50	Up
Testis	103 ± 7	4 of 4	0.20	Down
Male accessory glands	56 ± 5	4 of 4	0.10	Down
Virgin spermatheca	887 ± 46	4 of 4	1.87	Up
Mated spermatheca	1074 ± 56	4 of 4	2.26	Up
Adult carcass	1023 ± 57	4 of 4	2.20	Up
Larval CNS	196 ± 12	4 of 4	0.41	Down
Larval Salivary gland	158 ± 14	4 of 4	0.33	Down
Larval midgut	20 ± 1	3 of 4	0.04	Down
Larval tubule	44 ± 3	4 of 4	0.10	Down
Larval hindgut	216 ± 34	4 of 4	0.45	Down
Larval fat body	127 ± 10	4 of 4	0.30	Down
Larval trachea	185 ± 36	4 of 4	0.39	Down
Larval carcass	196 ± 24	4 of 4	0.41	Down
S2 cells (growing)	303 ± 15	4 of 4	0.64	Down
Whole fly	475 ± 14	4 of 4

Looking for FBgn0038256. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720