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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038258 through 18771 annotations produced 1 hits



(CG7362):

Annotation Number : CG7362
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038258
Gbrowse : chr3R:10575082-10588758 (-) // 100.0 //
Probeset : 1629202_at
Accessions : protein= NP_650388;, nucleotide= NM_142131;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0038258.
Homophila reports that CG7362 is a close match (4e-57) to human gene PK1;PKLR (NP_000289), a gene associated with Pyruvate kinase deficiency, 266200 (3).
TRiP has 1 RNAi stocks for FBgn0038258 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038258 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.10Down
Head0 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.10Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.34None
Crop3 ± 10 of 4 0.30None
Midgut0 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.20Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.05Down
Fat body2 ± 20 of 4 0.30None
Ovary0 ± 00 of 4 0.00Down
Testis36 ± 43 of 4 3.80Up
Male accessory glands2 ± 10 of 4 0.30None
Virgin spermatheca1 ± 00 of 4 0.14Down
Mated spermatheca1 ± 00 of 4 0.14Down
Adult carcass0 ± 00 of 4 0.10Down
Larval CNS0 ± 10 of 4 0.09Down
Larval Salivary gland5 ± 10 of 4 0.61None
Larval midgut0 ± 00 of 4 0.06Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut0 ± 00 of 4 0.04Down
Larval fat body6 ± 30 of 4 0.60None
Larval trachea3 ± 30 of 4 0.36None
Larval carcass0 ± 00 of 4 0.03Down
S2 cells (growing)0 ± 00 of 4 0.03Down
Whole fly9 ± 21 of 4

Looking for FBgn0038258. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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