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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038260 through 18771 annotations produced 1 hits



(CG14855):

Annotation Number : CG14855
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038260
Gbrowse : chr3R:10622028-10624193 (+) // 100.0 //
Probeset : 1639504_at
Accessions : protein= NP_650390;, nucleotide= NM_142133;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0038260.
Homophila reports that CG14855 is a close match (2e-11) to human gene OAT4L;SLC22A12;URAT1 (NP_700357), a gene associated with Hypouricemia, renal, 220150 (3).
BioGrid reports that CG14855 interacts with CG9757 Dmel CG34380 .
VDRC has 1 RNAi stocks for FBgn0038260 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 24 of 4 4.90Up
Head25 22 of 4 2.80Up
Eye9 20 of 4 1.05None
Thoracicoabdominal ganglion25 10 of 4 2.70Up
Salivary gland18 30 of 4 1.95None
Crop9 20 of 4 1.00None
Midgut13 20 of 4 1.50None
Tubule25 12 of 4 2.70Up
Hindgut15 20 of 4 1.60None
Heart78 34 of 4 8.43Up
Fat body11 40 of 4 1.26None
Ovary6 00 of 4 0.70Down
Testis11 10 of 4 1.30None
Male accessory glands12 30 of 4 1.40None
Virgin spermatheca12 20 of 4 1.39None
Mated spermatheca10 00 of 4 1.10None
Adult carcass19 10 of 4 2.10Up
Larval CNS93 94 of 410.04Up
Larval Salivary gland18 30 of 4 2.02None
Larval midgut16 10 of 4 1.77Up
Larval tubule54 24 of 4 5.90Up
Larval hindgut19 30 of 4 2.04None
Larval fat body6 10 of 4 0.70None
Larval trachea16 31 of 4 1.81Up
Larval carcass193 434 of 420.91Up
S2 cells (growing)11 11 of 4 1.27None
Whole fly9 00 of 4

Looking for FBgn0038260. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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