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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038272 through 18771 annotations produced 1 hits



(CG7265):

Annotation Number : CG7265
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038272
Gbrowse : chr3R:10718107-10719675 (-) // 100.0 //
Probeset : 1633042_at
Accessions : protein= NP_650402;, nucleotide= NM_142145;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038272.
BDGP gene expression has embryonic in situ data for CG7265: 13 pix of staining in 18 body parts.
BioGrid reports that CG7265 interacts with CG8036 .
VDRC has 3 RNAi stocks for FBgn0038272 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain83 ± 34 of 4 0.80Down
Head81 ± 64 of 4 0.80Down
Eye97 ± 64 of 4 0.94None
Thoracicoabdominal ganglion85 ± 44 of 4 0.80Down
Salivary gland286 ± 54 of 4 2.75Up
Crop165 ± 54 of 4 1.60Up
Midgut160 ± 34 of 4 1.50Up
Tubule147 ± 74 of 4 1.40Up
Hindgut170 ± 114 of 4 1.60Up
Heart101 ± 44 of 4 0.98None
Fat body125 ± 254 of 4 1.20None
Ovary140 ± 64 of 4 1.30Up
Testis54 ± 44 of 4 0.50Down
Male accessory glands220 ± 64 of 4 2.10Up
Virgin spermatheca101 ± 24 of 4 0.98None
Mated spermatheca89 ± 64 of 4 0.86None
Adult carcass94 ± 34 of 4 0.90None
Larval CNS197 ± 104 of 4 1.91Up
Larval Salivary gland168 ± 114 of 4 1.63Up
Larval midgut256 ± 204 of 4 2.47Up
Larval tubule376 ± 134 of 4 3.60Up
Larval hindgut231 ± 104 of 4 2.23Up
Larval fat body189 ± 214 of 4 1.80Up
Larval trachea204 ± 64 of 4 1.96Up
Larval carcass147 ± 134 of 4 1.42Up
S2 cells (growing)175 ± 14 of 4 1.69Up
Whole fly103 ± 54 of 4

Looking for FBgn0038272. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime