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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038273 through 18771 annotations produced 1 hits



(CG14860):

Annotation Number : CG14860
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038273
Gbrowse : chr3R:10720625-10721408 (+) // 100.0 //
Probeset : 1631450_at
Accessions : protein= NP_650403;, nucleotide= NM_142146;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0038273.
BioGrid reports that CG14860 interacts with CG4747 .
VDRC has 3 RNAi stocks for FBgn0038273 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20Down
Head1 ± 00 of 4 0.20Down
Eye1 ± 00 of 4 0.16Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.20Down
Salivary gland11 ± 10 of 4 1.18None
Crop6 ± 20 of 4 0.70None
Midgut6 ± 10 of 4 0.70None
Tubule2 ± 00 of 4 0.20Down
Hindgut14 ± 13 of 4 1.40None
Heart1 ± 00 of 4 0.19Down
Fat body2 ± 20 of 4 0.22Down
Ovary22 ± 14 of 4 2.30Up
Testis2 ± 00 of 4 0.30Down
Male accessory glands2 ± 10 of 4 0.20Down
Virgin spermatheca2 ± 10 of 4 0.26Down
Mated spermatheca1 ± 00 of 4 0.10Down
Adult carcass5 ± 20 of 4 0.50None
Larval CNS4 ± 11 of 4 0.43Down
Larval Salivary gland5 ± 10 of 4 0.55None
Larval midgut5 ± 10 of 4 0.59None
Larval tubule13 ± 24 of 4 1.40None
Larval hindgut10 ± 23 of 4 1.08None
Larval fat body5 ± 10 of 4 0.60None
Larval trachea4 ± 20 of 4 0.42Down
Larval carcass8 ± 13 of 4 0.90None
S2 cells (growing)5 ± 00 of 4 0.53Down
Whole fly9 ± 14 of 4

Looking for FBgn0038273. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime