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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038280 through 18771 annotations produced 1 hits


Annotation Number : CG14861
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038280
Gbrowse : chr3R:10840491-10841759 (+) // 100.0 //
Probeset : 1629535_at
Accessions : protein= NP_650409;, nucleotide= NM_142152;
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0038280.
BioGrid reports that CG14861 interacts with CG1821 .
VDRC has 5 RNAi stocks for FBgn0038280 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye3 10 of 4 0.06Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland6 30 of 4 0.10Down
Crop1 00 of 4 0.00Down
Midgut2 10 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart1 00 of 4 0.03Down
Fat body3 21 of 4 0.06Down
Ovary2 10 of 4 0.00Down
Testis696 104 of 411.50Up
Male accessory glands5 00 of 4 0.10Down
Virgin spermatheca2 10 of 4 0.04Down
Mated spermatheca4 20 of 4 0.08Down
Adult carcass5 10 of 4 0.10Down
Larval CNS2 10 of 4 0.04Down
Larval Salivary gland5 10 of 4 0.10Down
Larval midgut3 10 of 4 0.06Down
Larval tubule3 00 of 4 0.00Down
Larval hindgut2 00 of 4 0.05Down
Larval fat body56 242 of 4 0.90None
Larval trachea4 21 of 4 0.07Down
Larval carcass3 10 of 4 0.06Down
S2 cells (growing)2 00 of 4 0.04Down
Whole fly60 14 of 4

Looking for FBgn0038280. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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