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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038281 through 18771 annotations produced 1 hits



Ribosomal protein L10Aa (RpL10Aa):

Annotation Number : CG3843
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038281
Gbrowse : chr3R:10863087-10863872 (+) // 100.0 //
Probeset : 1638762_at
Accessions : protein= NP_650410;, nucleotide= NM_142153;
Pathway : engulfment // inferred from mutant phenotype"
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
FlyMine data for FBgn0038281.
BDGP gene expression has embryonic in situ data for CG3843: 8 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0038281 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland8 ± 20 of 4 0.06Down
Crop7 ± 30 of 4 0.10Down
Midgut3 ± 10 of 4 0.00Down
Tubule5 ± 10 of 4 0.00Down
Hindgut5 ± 10 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body1 ± 00 of 4 0.01Down
Ovary1 ± 00 of 4 0.00Down
Testis1223 ± 214 of 4 9.20Up
Male accessory glands4 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.01Down
Mated spermatheca4 ± 10 of 4 0.03Down
Adult carcass4 ± 10 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut4 ± 11 of 4 0.04Down
Larval tubule3 ± 20 of 4 0.00Down
Larval hindgut3 ± 00 of 4 0.02Down
Larval fat body137 ± 863 of 4 1.00None
Larval trachea7 ± 111 of 4 0.05Down
Larval carcass2 ± 00 of 4 0.02Down
S2 cells (growing)5 ± 00 of 4 0.04Down
Whole fly132 ± 84 of 4

Looking for FBgn0038281. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime