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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038282 through 18771 annotations produced 2 hits



dpr9 (dpr9):

Annotation Number : CG12601
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038282
Gbrowse : chr3R:10881679-10889064 (-) // 100.0 //
Probeset : 1632889_at
Accessions : protein= NP_996215;, nucleotide= NM_206493;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038282.
TRiP has 1 RNAi stocks for FBgn0038282 available for purchase.
VDRC has 5 RNAi stocks for FBgn0038282 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain378 234 of 430.90Up
Head74 94 of 4 6.00Up
Eye26 14 of 4 2.19Up
Thoracicoabdominal ganglion162 144 of 413.30Up
Salivary gland3 00 of 4 0.26Down
Crop2 10 of 4 0.20Down
Midgut0 00 of 4 0.00Down
Tubule1 00 of 4 0.10Down
Hindgut0 00 of 4 0.00Down
Heart1 00 of 4 0.14Down
Fat body14 52 of 4 1.15None
Ovary0 00 of 4 0.00Down
Testis4 00 of 4 0.40Down
Male accessory glands0 00 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.24Down
Mated spermatheca6 11 of 4 0.53None
Adult carcass1 00 of 4 0.10Down
Larval CNS109 134 of 4 8.92Up
Larval Salivary gland2 00 of 4 0.20Down
Larval midgut1 00 of 4 0.10Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut3 10 of 4 0.28Down
Larval fat body0 00 of 4 0.10Down
Larval trachea0 00 of 4 0.08Down
Larval carcass0 00 of 4 0.06Down
S2 cells (growing)0 00 of 4 0.04Down
Whole fly12 13 of 4



dpr9 (dpr9):

Annotation Number : CG31114
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038282
Gbrowse : chr3R:10892146-10902927 (-) // 100.0 //
Probeset : 1626748_at
Accessions : protein= NP_996215;, nucleotide= NM_206493;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038282.
TRiP has 1 RNAi stocks for FBgn0038282 available for purchase.
VDRC has 5 RNAi stocks for FBgn0038282 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 34 of 4 7.50Up
Head6 30 of 4 1.50None
Eye2 10 of 4 0.66None
Thoracicoabdominal ganglion18 63 of 4 4.30None
Salivary gland18 40 of 4 4.13None
Crop2 10 of 4 0.70None
Midgut6 10 of 4 1.40None
Tubule4 00 of 4 0.90None
Hindgut3 00 of 4 0.90None
Heart1 00 of 4 0.36None
Fat body2 30 of 4 0.59None
Ovary1 00 of 4 0.40None
Testis2 10 of 4 0.60None
Male accessory glands5 20 of 4 1.20None
Virgin spermatheca0 00 of 4 0.20None
Mated spermatheca1 00 of 4 0.33None
Adult carcass7 20 of 4 1.80None
Larval CNS5 21 of 4 1.29None
Larval Salivary gland4 20 of 4 1.01None
Larval midgut1 00 of 4 0.43None
Larval tubule3 10 of 4 0.90None
Larval hindgut3 10 of 4 0.72None
Larval fat body4 20 of 4 1.00None
Larval trachea2 20 of 4 0.55None
Larval carcass2 00 of 4 0.49None
S2 cells (growing)2 00 of 4 0.54None
Whole fly4 10 of 4

Looking for FBgn0038282. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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