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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038285 through 18771 annotations produced 1 hits



(CG6974):

Annotation Number : CG6974
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038285
Gbrowse : chr3R:10904251-10905007 (-) // 100.0 //
Probeset : 1623942_at
Accessions : protein= NP_650414;, nucleotide= NM_142157;
Pathway : 0017090 // meprin A complex // inferred from sequence or structural similarity
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0038285.
VDRC has 3 RNAi stocks for FBgn0038285 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.40None
Head1 ± 00 of 4 0.60None
Eye1 ± 00 of 4 0.71None
Thoracicoabdominal ganglion1 ± 00 of 4 0.60None
Salivary gland1 ± 00 of 4 0.59None
Crop1 ± 00 of 4 0.50None
Midgut3 ± 10 of 4 1.30None
Tubule1 ± 00 of 4 0.50Down
Hindgut0 ± 00 of 4 0.20None
Heart1 ± 10 of 4 0.80None
Fat body0 ± 00 of 4 0.30None
Ovary0 ± 00 of 4 0.30None
Testis37 ± 34 of 415.50Up
Male accessory glands1 ± 00 of 4 0.50None
Virgin spermatheca1 ± 00 of 4 0.72None
Mated spermatheca0 ± 00 of 4 0.19None
Adult carcass1 ± 00 of 4 0.40None
Larval CNS0 ± 00 of 4 0.21None
Larval Salivary gland1 ± 00 of 4 0.65None
Larval midgut1 ± 00 of 4 0.54None
Larval tubule2 ± 10 of 4 1.10None
Larval hindgut0 ± 00 of 4 0.18None
Larval fat body4 ± 20 of 4 1.90None
Larval trachea0 ± 00 of 4 0.40None
Larval carcass0 ± 00 of 4 0.33None
S2 cells (growing)0 ± 00 of 4 0.27None
Whole fly2 ± 10 of 4

Looking for FBgn0038285. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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