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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038291 through 18771 annotations produced 1 hits



(CG3984):

Annotation Number : CG3984
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038291
Gbrowse : chr3R:10962883-10964626 (+) // 100.0 //
Probeset : 1638733_at
Accessions : protein= NP_650420;, nucleotide= NM_142163;
FlyMine data for FBgn0038291.
VDRC has 2 RNAi stocks for FBgn0038291 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 10 of 4 0.30Down
Head105 144 of 4 2.20Up
Eye17 23 of 4 0.36Down
Thoracicoabdominal ganglion19 21 of 4 0.40Down
Salivary gland20 20 of 4 0.41Down
Crop12 30 of 4 0.30Down
Midgut6 10 of 4 0.10Down
Tubule6 10 of 4 0.10Down
Hindgut35 24 of 4 0.70Down
Heart217 494 of 4 4.44Up
Fat body683 1664 of 413.93Up
Ovary1 00 of 4 0.00Down
Testis2 00 of 4 0.00Down
Male accessory glands7 30 of 4 0.20Down
Virgin spermatheca460 254 of 4 9.40Up
Mated spermatheca619 554 of 412.63Up
Adult carcass419 264 of 4 8.60Up
Larval CNS3 20 of 4 0.08Down
Larval Salivary gland53 74 of 4 1.09None
Larval midgut8 10 of 4 0.16Down
Larval tubule7 10 of 4 0.10Down
Larval hindgut58 94 of 4 1.19None
Larval fat body519 654 of 410.60Up
Larval trachea29 311 of 4 0.59None
Larval carcass30 20 of 4 0.63Down
S2 cells (growing)694 464 of 414.17Up
Whole fly49 34 of 4

Looking for FBgn0038291. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime