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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038292 through 18771 annotations produced 1 hits



(CG3987):

Annotation Number : CG3987
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038292
Gbrowse : chr3R:10965706-10967444 (+) // 100.0 //
Probeset : 1627047_at
Accessions : protein= NP_650421;, nucleotide= NM_142164;
FlyMine data for FBgn0038292.
BDGP gene expression has embryonic in situ data for CG3987: 20 pix of staining in 3 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head7 ± 11 of 4 0.00Down
Eye5 ± 10 of 4 0.03Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.00Down
Salivary gland11 ± 40 of 4 0.06Down
Crop6 ± 20 of 4 0.00Down
Midgut2605 ± 524 of 414.50Up
Tubule52 ± 104 of 4 0.30Down
Hindgut411 ± 74 of 4 2.30Up
Heart9 ± 10 of 4 0.05Down
Fat body33 ± 114 of 4 0.19Down
Ovary2 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands5 ± 10 of 4 0.00Down
Virgin spermatheca63 ± 24 of 4 0.35Down
Mated spermatheca55 ± 74 of 4 0.31Down
Adult carcass22 ± 34 of 4 0.10Down
Larval CNS3 ± 01 of 4 0.02Down
Larval Salivary gland6 ± 10 of 4 0.04Down
Larval midgut2575 ± 1094 of 414.29Up
Larval tubule69 ± 144 of 4 0.40Down
Larval hindgut583 ± 334 of 4 3.24Up
Larval fat body4 ± 10 of 4 0.00Down
Larval trachea4 ± 00 of 4 0.02Down
Larval carcass8 ± 11 of 4 0.05Down
S2 cells (growing)5 ± 03 of 4 0.03Down
Whole fly180 ± 274 of 4

Looking for FBgn0038292. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime