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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038300 through 18771 annotations produced 1 hits



(CG4203):

Annotation Number : CG4203
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038300
Gbrowse : chr3R:11034927-11037071 (+) // 100.0 //
Probeset : 1629165_at
Accessions : protein= NP_650428;, nucleotide= NM_142171;
Pathway : 0000785 // chromatin // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electron
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0038300.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 ± 24 of 4 0.80None
Head34 ± 24 of 4 0.50Down
Eye30 ± 24 of 4 0.40Down
Thoracicoabdominal ganglion50 ± 14 of 4 0.70Down
Salivary gland55 ± 54 of 4 0.74None
Crop54 ± 44 of 4 0.70Down
Midgut33 ± 12 of 4 0.40Down
Tubule28 ± 24 of 4 0.40Down
Hindgut39 ± 24 of 4 0.50Down
Heart37 ± 14 of 4 0.51Down
Fat body48 ± 64 of 4 0.65Down
Ovary152 ± 04 of 4 2.00Up
Testis9 ± 13 of 4 0.10Down
Male accessory glands51 ± 24 of 4 0.70Down
Virgin spermatheca37 ± 24 of 4 0.50Down
Mated spermatheca41 ± 14 of 4 0.55Down
Adult carcass48 ± 34 of 4 0.60Down
Larval CNS128 ± 54 of 4 1.71Up
Larval Salivary gland66 ± 34 of 4 0.89None
Larval midgut32 ± 14 of 4 0.43Down
Larval tubule30 ± 14 of 4 0.40Down
Larval hindgut41 ± 04 of 4 0.55Down
Larval fat body33 ± 24 of 4 0.40Down
Larval trachea56 ± 54 of 4 0.75Down
Larval carcass45 ± 14 of 4 0.60Down
S2 cells (growing)86 ± 14 of 4 1.15None
Whole fly74 ± 54 of 4

Looking for FBgn0038300. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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