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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038304 through 18771 annotations produced 1 hits



(CG12241):

Annotation Number : CG12241
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038304
Gbrowse : chr3R:11044983-11048093 (+) // 100.0 //
Probeset : 1625427_at
Accessions : protein= NP_650432;, nucleotide= NM_142175;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005096 // GTPase activator activity // inferred from sequence or structural similarity /// 0005097 // Rab GTPase activa
FlyMine data for FBgn0038304.
TRiP has 1 RNAi stocks for FBgn0038304 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain168 34 of 4 1.20Up
Head109 34 of 4 0.80Down
Eye107 64 of 4 0.80Down
Thoracicoabdominal ganglion181 24 of 4 1.30Up
Salivary gland215 84 of 4 1.59Up
Crop106 54 of 4 0.80Down
Midgut118 54 of 4 0.90Down
Tubule195 74 of 4 1.40Up
Hindgut119 34 of 4 0.90Down
Heart102 44 of 4 0.76Down
Fat body143 94 of 4 1.06None
Ovary214 14 of 4 1.60Up
Testis249 94 of 4 1.80Up
Male accessory glands559 184 of 4 4.10Up
Virgin spermatheca124 34 of 4 0.92None
Mated spermatheca125 94 of 4 0.92None
Adult carcass89 04 of 4 0.70Down
Larval CNS154 104 of 4 1.14Up
Larval Salivary gland254 54 of 4 1.88Up
Larval midgut169 134 of 4 1.25None
Larval tubule242 74 of 4 1.80Up
Larval hindgut209 24 of 4 1.55Up
Larval fat body140 34 of 4 1.00None
Larval trachea108 114 of 4 0.80Down
Larval carcass166 34 of 4 1.23Up
S2 cells (growing)153 44 of 4 1.13Up
Whole fly135 44 of 4

Looking for FBgn0038304. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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