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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038306 through 18771 annotations produced 1 hits



Arginine methyltransferase 3 (Art3):

Annotation Number : CG6563
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038306
Gbrowse : chr3R:11053324-11055161 (-) // 100.0 //
Probeset : 1627778_a_at
Accessions : protein= NP_650434; /// NP_731984;, nucleotide= NM_142177; /// NM_169623;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred f
FlyMine data for FBgn0038306.
BDGP gene expression has embryonic in situ data for CG6563: 10 pix of staining in 11 body parts.
VDRC has 1 RNAi stocks for FBgn0038306 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 14 of 4 0.30Down
Head36 34 of 4 0.30Down
Eye27 04 of 4 0.26Down
Thoracicoabdominal ganglion36 14 of 4 0.30Down
Salivary gland33 33 of 4 0.31Down
Crop61 14 of 4 0.60Down
Midgut38 24 of 4 0.40Down
Tubule29 64 of 4 0.30Down
Hindgut35 14 of 4 0.30Down
Heart37 44 of 4 0.35Down
Fat body47 54 of 4 0.44Down
Ovary188 24 of 4 1.80Up
Testis90 24 of 4 0.80None
Male accessory glands76 74 of 4 0.70Down
Virgin spermatheca30 24 of 4 0.28Down
Mated spermatheca56 34 of 4 0.52Down
Adult carcass30 13 of 4 0.30Down
Larval CNS145 204 of 4 1.36Up
Larval Salivary gland80 84 of 4 0.75None
Larval midgut33 24 of 4 0.31Down
Larval tubule12 23 of 4 0.10Down
Larval hindgut61 74 of 4 0.57Down
Larval fat body16 53 of 4 0.20Down
Larval trachea137 184 of 4 1.28Up
Larval carcass94 254 of 4 0.89None
S2 cells (growing)130 44 of 4 1.22Up
Whole fly107 64 of 4

Looking for FBgn0038306. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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