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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038311 through 18771 annotations produced 1 hits



(CG14864):

Annotation Number : CG14864
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038311
Gbrowse : chr3R:11092450-11094151 (-) // 100.0 //
Probeset : 1641204_at
Accessions : protein= NP_001036714; /// NP_650439;, nucleotide= NM_001043249; /// NM_142182;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038311.
BioGrid reports that CG14864 interacts with CG4395 CG5047 CG6776 CG17654 CG3322 CG4280 CG5450 CG6998 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain53 ± 24 of 4 2.50Up
Head15 ± 23 of 4 0.70None
Eye11 ± 24 of 4 0.54Down
Thoracicoabdominal ganglion60 ± 54 of 4 2.90Up
Salivary gland1 ± 00 of 4 0.07Down
Crop4 ± 10 of 4 0.20Down
Midgut4 ± 00 of 4 0.20Down
Tubule6 ± 00 of 4 0.30Down
Hindgut1 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.07Down
Fat body4 ± 40 of 4 0.22Down
Ovary1 ± 00 of 4 0.10Down
Testis230 ± 94 of 411.00Up
Male accessory glands7 ± 10 of 4 0.40Down
Virgin spermatheca3 ± 00 of 4 0.16Down
Mated spermatheca1 ± 00 of 4 0.07Down
Adult carcass9 ± 20 of 4 0.50Down
Larval CNS8 ± 43 of 4 0.39Down
Larval Salivary gland92 ± 84 of 4 4.42Up
Larval midgut4 ± 10 of 4 0.22Down
Larval tubule6 ± 20 of 4 0.30Down
Larval hindgut1 ± 00 of 4 0.06Down
Larval fat body19 ± 71 of 4 0.90None
Larval trachea4 ± 21 of 4 0.20Down
Larval carcass1 ± 00 of 4 0.07Down
S2 cells (growing)9 ± 03 of 4 0.43Down
Whole fly21 ± 14 of 4

Looking for FBgn0038311. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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