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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038315 through 18771 annotations produced 1 hits



(CG14866):

Annotation Number : CG14866
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038315
Gbrowse : chr3R:11142194-11144012 (+) // 100.0 //
Probeset : 1631262_at
Accessions : protein= NP_001138057; /// NP_650444;, nucleotide= NM_001144585; /// NM_142187;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0038315.
BDGP gene expression has embryonic in situ data for CG14866: 14 pix of staining in 11 body parts.
BioGrid reports that CG14866 interacts with CG7191 .
TRiP has 1 RNAi stocks for FBgn0038315 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038315 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 0.80None
Head4 ± 11 of 4 0.90None
Eye4 ± 10 of 4 0.90None
Thoracicoabdominal ganglion4 ± 10 of 4 1.00None
Salivary gland15 ± 41 of 4 3.20None
Crop8 ± 12 of 4 1.70None
Midgut5 ± 20 of 4 1.10None
Tubule2 ± 00 of 4 0.60Down
Hindgut5 ± 00 of 4 1.10None
Heart1 ± 00 of 4 0.29Down
Fat body5 ± 21 of 4 1.08None
Ovary2 ± 00 of 4 0.60None
Testis3 ± 00 of 4 0.60None
Male accessory glands10 ± 20 of 4 2.10None
Virgin spermatheca3 ± 10 of 4 0.61None
Mated spermatheca4 ± 00 of 4 0.91None
Adult carcass6 ± 10 of 4 1.30None
Larval CNS3 ± 00 of 4 0.63None
Larval Salivary gland5 ± 10 of 4 1.06None
Larval midgut11 ± 01 of 4 2.34Up
Larval tubule3 ± 00 of 4 0.70None
Larval hindgut12 ± 31 of 4 2.54None
Larval fat body4 ± 20 of 4 0.90None
Larval trachea7 ± 10 of 4 1.54Up
Larval carcass12 ± 11 of 4 2.60Up
S2 cells (growing)3 ± 00 of 4 0.70None
Whole fly4 ± 01 of 4

Looking for FBgn0038315. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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