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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038316 through 18771 annotations produced 1 hits


Annotation Number : CG6276
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038316
Gbrowse : chr3R:11143923-11145768 (-) // 100.0 //
Probeset : 1639663_at
Accessions : protein= NP_650445;, nucleotide= NM_142188;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0038316.
BDGP gene expression has embryonic in situ data for CG6276: 4 pix of staining in 1 body parts.
BioGrid reports that CG6276 interacts with CG7757 CG6569 CG8851 .
TRiP has 1 RNAi stocks for FBgn0038316 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038316 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain197 74 of 4 1.40Up
Head148 64 of 4 1.10None
Eye158 74 of 4 1.16None
Thoracicoabdominal ganglion188 34 of 4 1.40Up
Salivary gland93 84 of 4 0.68Down
Crop176 74 of 4 1.30Up
Midgut96 44 of 4 0.70Down
Tubule126 64 of 4 0.90None
Hindgut159 64 of 4 1.20Up
Heart96 44 of 4 0.70Down
Fat body106 54 of 4 0.77Down
Ovary219 64 of 4 1.60Up
Testis89 64 of 4 0.70Down
Male accessory glands78 34 of 4 0.60Down
Virgin spermatheca118 94 of 4 0.86None
Mated spermatheca121 64 of 4 0.89None
Adult carcass116 104 of 4 0.90None
Larval CNS186 124 of 4 1.36Up
Larval Salivary gland176 194 of 4 1.29None
Larval midgut154 84 of 4 1.13None
Larval tubule203 24 of 4 1.50Up
Larval hindgut188 104 of 4 1.37Up
Larval fat body114 34 of 4 0.80Down
Larval trachea201 124 of 4 1.47Up
Larval carcass204 74 of 4 1.49Up
S2 cells (growing)91 44 of 4 0.67Down
Whole fly137 54 of 4

Looking for FBgn0038316. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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