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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038318 through 18771 annotations produced 1 hits



(CG6236):

Annotation Number : CG6236
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038318
Gbrowse : chr3R:11151046-11154000 (-) // 99.67 //
Probeset : 1626240_s_at
Accessions : protein= NP_650446; /// NP_732014;, nucleotide= NM_142189; /// NM_169646;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0038318.
VDRC has 3 RNAi stocks for FBgn0038318 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain140 74 of 4 1.90Up
Head51 24 of 4 0.70Down
Eye67 24 of 4 0.91None
Thoracicoabdominal ganglion168 84 of 4 2.30Up
Salivary gland150 54 of 4 2.05Up
Crop38 33 of 4 0.50Down
Midgut73 64 of 4 1.00None
Tubule63 14 of 4 0.90Down
Hindgut54 34 of 4 0.70Down
Heart90 44 of 4 1.23Up
Fat body44 63 of 4 0.60Down
Ovary110 24 of 4 1.50Up
Testis12 11 of 4 0.20Down
Male accessory glands79 103 of 4 1.10None
Virgin spermatheca26 32 of 4 0.37Down
Mated spermatheca31 33 of 4 0.43Down
Adult carcass50 31 of 4 0.70Down
Larval CNS166 94 of 4 2.26Up
Larval Salivary gland116 54 of 4 1.58Up
Larval midgut118 44 of 4 1.60Up
Larval tubule64 94 of 4 0.90None
Larval hindgut98 24 of 4 1.33Up
Larval fat body22 12 of 4 0.30Down
Larval trachea94 54 of 4 1.29Up
Larval carcass72 64 of 4 0.99None
S2 cells (growing)337 144 of 4 4.59Up
Whole fly73 24 of 4

Looking for FBgn0038318. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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