FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038318 through 18771 annotations produced 1 hits

(CG6236):

Annotation Number : CG6236
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038318
Gbrowse : chr3R:11151046-11154000 (-) // 99.67 //
Probeset : 1626240_s_at
Accessions : protein= NP_650446; /// NP_732014;, nucleotide= NM_142189; /// NM_169646;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0038318.
VDRC has 3 RNAi stocks for FBgn0038318 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	140 ± 7	4 of 4	1.90	Up
Head	51 ± 2	4 of 4	0.70	Down
Eye	67 ± 2	4 of 4	0.91	None
Thoracicoabdominal ganglion	168 ± 8	4 of 4	2.30	Up
Salivary gland	150 ± 5	4 of 4	2.05	Up
Crop	38 ± 3	3 of 4	0.50	Down
Midgut	73 ± 6	4 of 4	1.00	None
Tubule	63 ± 1	4 of 4	0.90	Down
Hindgut	54 ± 3	4 of 4	0.70	Down
Heart	90 ± 4	4 of 4	1.23	Up
Fat body	44 ± 6	3 of 4	0.60	Down
Ovary	110 ± 2	4 of 4	1.50	Up
Testis	12 ± 1	1 of 4	0.20	Down
Male accessory glands	79 ± 10	3 of 4	1.10	None
Virgin spermatheca	26 ± 3	2 of 4	0.37	Down
Mated spermatheca	31 ± 3	3 of 4	0.43	Down
Adult carcass	50 ± 3	1 of 4	0.70	Down
Larval CNS	166 ± 9	4 of 4	2.26	Up
Larval Salivary gland	116 ± 5	4 of 4	1.58	Up
Larval midgut	118 ± 4	4 of 4	1.60	Up
Larval tubule	64 ± 9	4 of 4	0.90	None
Larval hindgut	98 ± 2	4 of 4	1.33	Up
Larval fat body	22 ± 1	2 of 4	0.30	Down
Larval trachea	94 ± 5	4 of 4	1.29	Up
Larval carcass	72 ± 6	4 of 4	0.99	None
S2 cells (growing)	337 ± 14	4 of 4	4.59	Up
Whole fly	73 ± 2	4 of 4

Looking for FBgn0038318. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720