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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038325 through 18771 annotations produced 1 hits



(CG6194):

Annotation Number : CG6194
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038325
Gbrowse : chr3R:11179432-11182641 (-) // 100.0 //
Probeset : 1627764_at
Accessions : protein= NP_650452;, nucleotide= NM_142195;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0004197 // cysteine-type endopeptidase activity // inferred from sequence or structural similarity /// 0008233 // peptid
FlyMine data for FBgn0038325.
BDGP gene expression has embryonic in situ data for CG6194: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0038325 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain174 ± 24 of 4 1.30Up
Head100 ± 84 of 4 0.80Down
Eye130 ± 24 of 4 0.99None
Thoracicoabdominal ganglion149 ± 34 of 4 1.10Up
Salivary gland297 ± 134 of 4 2.25Up
Crop93 ± 44 of 4 0.70Down
Midgut110 ± 64 of 4 0.80Down
Tubule234 ± 104 of 4 1.80Up
Hindgut232 ± 124 of 4 1.80Up
Heart94 ± 44 of 4 0.72Down
Fat body73 ± 34 of 4 0.56Down
Ovary275 ± 94 of 4 2.10Up
Testis29 ± 34 of 4 0.20Down
Male accessory glands159 ± 44 of 4 1.20Up
Virgin spermatheca105 ± 104 of 4 0.80None
Mated spermatheca141 ± 74 of 4 1.07None
Adult carcass107 ± 54 of 4 0.80Down
Larval CNS122 ± 54 of 4 0.93None
Larval Salivary gland478 ± 344 of 4 3.62Up
Larval midgut134 ± 64 of 4 1.02None
Larval tubule139 ± 34 of 4 1.10None
Larval hindgut268 ± 154 of 4 2.03Up
Larval fat body61 ± 84 of 4 0.50Down
Larval trachea102 ± 54 of 4 0.78Down
Larval carcass84 ± 64 of 4 0.64Down
S2 cells (growing)94 ± 14 of 4 0.72Down
Whole fly132 ± 54 of 4

Looking for FBgn0038325. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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