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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038332 through 18771 annotations produced 1 hits



(CG6136):

Annotation Number : CG6136
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038332
Gbrowse : chr3R:11195756-11197898 (-) // 100.0 //
Probeset : 1635683_at
Accessions : protein= NP_650460;, nucleotide= NM_142203;
Interpro : 0005507 // copper ion binding // inferred from electronic annotation
FlyMine data for FBgn0038332.
BDGP gene expression has embryonic in situ data for CG6136: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0038332 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 ± 24 of 4 2.50Up
Head14 ± 14 of 4 0.80None
Eye9 ± 13 of 4 0.49Down
Thoracicoabdominal ganglion34 ± 44 of 4 1.80Up
Salivary gland13 ± 51 of 4 0.71None
Crop14 ± 04 of 4 0.80None
Midgut4 ± 00 of 4 0.20Down
Tubule5 ± 00 of 4 0.30Down
Hindgut6 ± 22 of 4 0.40Down
Heart6 ± 11 of 4 0.31Down
Fat body6 ± 11 of 4 0.31Down
Ovary2 ± 00 of 4 0.10Down
Testis279 ± 134 of 414.50Up
Male accessory glands4 ± 20 of 4 0.20Down
Virgin spermatheca8 ± 12 of 4 0.42Down
Mated spermatheca5 ± 10 of 4 0.30Down
Adult carcass10 ± 31 of 4 0.50None
Larval CNS15 ± 34 of 4 0.80None
Larval Salivary gland4 ± 11 of 4 0.24Down
Larval midgut5 ± 10 of 4 0.28Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut3 ± 11 of 4 0.19Down
Larval fat body20 ± 141 of 4 1.10None
Larval trachea7 ± 13 of 4 0.37Down
Larval carcass3 ± 01 of 4 0.17Down
S2 cells (growing)4 ± 02 of 4 0.22Down
Whole fly19 ± 34 of 4

Looking for FBgn0038332. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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