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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038334 through 18771 annotations produced 1 hits


heineken-cup (h-cup):

Annotation Number : CG6130
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038334
Gbrowse : chr3R:11207128-11208673 (-) // 100.0 //
Probeset : 1639927_at
Accessions : protein= NP_650462;, nucleotide= NM_142205;
FlyMine data for FBgn0038334.
BioGrid reports that CG6130 interacts with CG8206 .
VDRC has 2 RNAi stocks for FBgn0038334 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head3 ± 10 of 4 0.10Down
Eye2 ± 10 of 4 0.08Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland16 ± 30 of 4 0.52Down
Crop4 ± 10 of 4 0.10Down
Midgut3 ± 10 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut4 ± 10 of 4 0.10Down
Heart2 ± 01 of 4 0.10Down
Fat body8 ± 11 of 4 0.26Down
Ovary2 ± 00 of 4 0.10Down
Testis261 ± 144 of 4 8.60Up
Male accessory glands10 ± 11 of 4 0.30Down
Virgin spermatheca3 ± 10 of 4 0.12Down
Mated spermatheca6 ± 20 of 4 0.20Down
Adult carcass9 ± 10 of 4 0.30Down
Larval CNS3 ± 20 of 4 0.11Down
Larval Salivary gland5 ± 20 of 4 0.19Down
Larval midgut5 ± 10 of 4 0.17Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.09Down
Larval fat body32 ± 64 of 4 1.10None
Larval trachea4 ± 40 of 4 0.14Down
Larval carcass6 ± 00 of 4 0.21Down
S2 cells (growing)4 ± 00 of 4 0.16Down
Whole fly30 ± 24 of 4

Looking for FBgn0038334. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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