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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038337 through 18771 annotations produced 1 hits



(CG6125):

Annotation Number : CG6125
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038337
Gbrowse : chr3R:11228525-11232789 (-) // 100.0 //
Probeset : 1625022_a_at
Accessions : protein= NP_650465; /// NP_732032;, nucleotide= NM_142208; /// NM_169656;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // non-traceable author statement /// 0005215 // transporter activity // inferred from e
FlyMine data for FBgn0038337.
BDGP gene expression has embryonic in situ data for CG6125: 17 pix of staining in 3 body parts.
Homophila reports that CG6125 is a close match (5e-17) to human gene DFNB61;PRES;SLC26A5 (NP_996767), a gene associated with Deafness, autosomal recessive 61 (3).
VDRC has 3 RNAi stocks for FBgn0038337 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 ± 14 of 4 0.40Down
Head162 ± 44 of 4 1.30Up
Eye15 ± 24 of 4 0.13Down
Thoracicoabdominal ganglion140 ± 54 of 4 1.10None
Salivary gland17 ± 43 of 4 0.15Down
Crop34 ± 14 of 4 0.30Down
Midgut7 ± 11 of 4 0.10Down
Tubule4530 ± 5454 of 437.00Up
Hindgut761 ± 414 of 4 6.20Up
Heart8 ± 02 of 4 0.07Down
Fat body19 ± 131 of 4 0.15Down
Ovary6 ± 03 of 4 0.10Down
Testis89 ± 54 of 4 0.70Down
Male accessory glands44 ± 64 of 4 0.40Down
Virgin spermatheca16 ± 82 of 4 0.14Down
Mated spermatheca9 ± 03 of 4 0.08Down
Adult carcass94 ± 44 of 4 0.80Down
Larval CNS43 ± 74 of 4 0.36Down
Larval Salivary gland6 ± 10 of 4 0.06Down
Larval midgut12 ± 04 of 4 0.10Down
Larval tubule812 ± 464 of 4 6.60Up
Larval hindgut2183 ± 374 of 417.83Up
Larval fat body13 ± 33 of 4 0.10Down
Larval trachea205 ± 284 of 4 1.68Up
Larval carcass116 ± 204 of 4 0.95None
S2 cells (growing)22 ± 14 of 4 0.18Down
Whole fly122 ± 64 of 4

Looking for FBgn0038337. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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