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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038339 through 18771 annotations produced 1 hits



(CG6118):

Annotation Number : CG6118
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038339
Gbrowse : chr3R:11247876-11251314 (-) // 100.0 //
Probeset : 1627285_at
Accessions : protein= NP_001097805; /// NP_001097806;, nucleotide= NM_001104335; /// NM_001104336;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0038339.
BioGrid reports that CG6118 interacts with CG6912 .
VDRC has 3 RNAi stocks for FBgn0038339 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.50None
Head3 10 of 4 0.70None
Eye4 10 of 4 0.95None
Thoracicoabdominal ganglion4 00 of 4 1.10None
Salivary gland7 30 of 4 1.64None
Crop5 10 of 4 1.30None
Midgut4 10 of 4 0.90None
Tubule5 00 of 4 1.20None
Hindgut2 00 of 4 0.50None
Heart2 00 of 4 0.47None
Fat body4 20 of 4 0.94None
Ovary1 00 of 4 0.20None
Testis2 00 of 4 0.40None
Male accessory glands5 11 of 4 1.20None
Virgin spermatheca6 00 of 4 1.40None
Mated spermatheca3 10 of 4 0.83None
Adult carcass9 11 of 4 2.10None
Larval CNS1 11 of 4 0.36None
Larval Salivary gland8 02 of 4 1.95None
Larval midgut5 10 of 4 1.29None
Larval tubule4 01 of 4 1.10None
Larval hindgut4 01 of 4 1.08None
Larval fat body4 10 of 4 1.10None
Larval trachea2 10 of 4 0.47None
Larval carcass6 10 of 4 1.38None
S2 cells (growing)6 00 of 4 1.57None
Whole fly4 10 of 4

Looking for FBgn0038339. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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