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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038343 through 18771 annotations produced 1 hits


Annotation Number : CG14871
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038343
Gbrowse : chr3R:11310615-11311281 (-) // 100.0 //
Probeset : 1627086_at
Accessions : protein= NP_650471;, nucleotide= NM_142214;
FlyMine data for FBgn0038343.
VDRC has 1 RNAi stocks for FBgn0038343 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain297 274 of 426.20Up
Head80 84 of 4 7.10Up
Eye4 10 of 4 0.42Down
Thoracicoabdominal ganglion203 174 of 418.00Up
Salivary gland18 52 of 4 1.67None
Crop2 10 of 4 0.20Down
Midgut5 10 of 4 0.50Down
Tubule2 00 of 4 0.20Down
Hindgut1 00 of 4 0.20Down
Heart10 23 of 4 0.88None
Fat body5 20 of 4 0.46Down
Ovary1 00 of 4 0.10Down
Testis2 11 of 4 0.20Down
Male accessory glands8 11 of 4 0.70None
Virgin spermatheca1 00 of 4 0.16Down
Mated spermatheca3 10 of 4 0.32Down
Adult carcass11 31 of 4 1.00None
Larval CNS56 94 of 4 5.00Up
Larval Salivary gland4 11 of 4 0.41Down
Larval midgut4 10 of 4 0.36Down
Larval tubule3 10 of 4 0.30Down
Larval hindgut3 10 of 4 0.33Down
Larval fat body7 21 of 4 0.70None
Larval trachea1 10 of 4 0.17Down
Larval carcass5 00 of 4 0.47Down
S2 cells (growing)2 00 of 4 0.20Down
Whole fly11 13 of 4

Looking for FBgn0038343. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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