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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038347 through 18771 annotations produced 1 hits



/// (CG18522 /// DsecCG18522):

Annotation Number : CG18522
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038347
Gbrowse : chr3R:11357858-11363010 (-) // 100.0 //
Probeset : 1640489_at
Accessions : protein= NP_650475;, nucleotide= NM_142218;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from e
FlyMine data for FBgn0038347.
BDGP gene expression has embryonic in situ data for CG18522: 28 pix of staining in 7 body parts.
Homophila reports that CG18522 is a close match (3e-128) to human gene XDH (NP_000370), a gene associated with Xanthinuria, type I, 278300 (3).
BioGrid reports that CG18522 interacts with CG8204 .
VDRC has 1 RNAi stocks for FBgn0038347 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 ± 34 of 4 0.30Down
Head317 ± 194 of 4 1.00None
Eye87 ± 64 of 4 0.28Down
Thoracicoabdominal ganglion184 ± 104 of 4 0.60Down
Salivary gland1139 ± 684 of 4 3.59Up
Crop59 ± 24 of 4 0.20Down
Midgut2563 ± 874 of 4 8.10Up
Tubule2921 ± 4084 of 4 9.20Up
Hindgut262 ± 104 of 4 0.80None
Heart129 ± 44 of 4 0.41Down
Fat body293 ± 174 of 4 0.93None
Ovary40 ± 34 of 4 0.10Down
Testis174 ± 74 of 4 0.60Down
Male accessory glands56 ± 54 of 4 0.20Down
Virgin spermatheca275 ± 124 of 4 0.87None
Mated spermatheca222 ± 64 of 4 0.70Down
Adult carcass326 ± 124 of 4 1.00None
Larval CNS86 ± 94 of 4 0.27Down
Larval Salivary gland191 ± 124 of 4 0.61Down
Larval midgut715 ± 444 of 4 2.26Up
Larval tubule1931 ± 874 of 4 6.10Up
Larval hindgut236 ± 154 of 4 0.75Down
Larval fat body76 ± 134 of 4 0.20Down
Larval trachea210 ± 184 of 4 0.66Down
Larval carcass52 ± 84 of 4 0.17Down
S2 cells (growing)348 ± 74 of 4 1.10None
Whole fly316 ± 254 of 4

Looking for FBgn0038347. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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