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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038348 through 18771 annotations produced 1 hits



(CG18519):

Annotation Number : CG18519
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038348
Gbrowse : chr3R:11363564-11368113 (-) // 100.0 //
Probeset : 1638441_a_at
Accessions : protein= NP_650476; /// NP_732047;, nucleotide= NM_142219; /// NM_169665;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from e
FlyMine data for FBgn0038348.
Homophila reports that CG18519 is a close match (1e-98) to human gene XDH (NP_000370), a gene associated with Xanthinuria, type I, 278300 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.60None
Head6 20 of 4 2.00None
Eye6 12 of 4 1.78None
Thoracicoabdominal ganglion5 10 of 4 1.60None
Salivary gland8 20 of 4 2.50None
Crop5 10 of 4 1.50None
Midgut11 10 of 4 3.30Up
Tubule10 11 of 4 2.90Up
Hindgut3 10 of 4 1.00None
Heart1 11 of 4 0.42None
Fat body4 30 of 4 1.38None
Ovary3 00 of 4 1.10None
Testis6 00 of 4 1.90None
Male accessory glands5 20 of 4 1.60None
Virgin spermatheca9 10 of 4 2.78Up
Mated spermatheca9 20 of 4 2.85None
Adult carcass12 20 of 4 3.60Up
Larval CNS4 10 of 4 1.22None
Larval Salivary gland5 10 of 4 1.53None
Larval midgut5 10 of 4 1.68None
Larval tubule9 21 of 4 2.90Up
Larval hindgut12 12 of 4 3.66Up
Larval fat body4 21 of 4 1.20None
Larval trachea80 214 of 423.55Up
Larval carcass413 534 of 4120.68Up
S2 cells (growing)6 00 of 4 1.96Up
Whole fly3 10 of 4

Looking for FBgn0038348. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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