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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038354 through 18771 annotations produced 1 hits


Annotation Number : CG5404
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038354
Gbrowse : chr3R:11530416-11534156 (+) // 100.0 //
Probeset : 1639014_at
Accessions : protein= NP_650482;, nucleotide= NM_142225;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0015381 // high affinity sulfate transmembran
FlyMine data for FBgn0038354.
BDGP gene expression has embryonic in situ data for CG5404: 2 pix of staining in 1 body parts.
Homophila reports that CG5404 is a close match (2e-13) to human gene DFNB4;EVA;PDS;SLC26A4 (NP_000432), a gene associated with Enlarged vestibular aqueduct, 600791 (3);Pendred syndrome, 274600 (3).
VDRC has 3 RNAi stocks for FBgn0038354 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 24 of 4 8.70Up
Head26 34 of 4 3.10Up
Eye10 03 of 4 1.16None
Thoracicoabdominal ganglion71 54 of 4 8.20Up
Salivary gland4 20 of 4 0.56None
Crop2 10 of 4 0.30Down
Midgut4 10 of 4 0.50None
Tubule51 74 of 4 5.90Up
Hindgut245 14 of 428.20Up
Heart1 10 of 4 0.19Down
Fat body10 41 of 4 1.18None
Ovary1 00 of 4 0.20Down
Testis2 10 of 4 0.30Down
Male accessory glands5 20 of 4 0.60None
Virgin spermatheca5 20 of 4 0.57None
Mated spermatheca3 10 of 4 0.44Down
Adult carcass2 10 of 4 0.20Down
Larval CNS32 84 of 4 3.73Up
Larval Salivary gland2 10 of 4 0.24Down
Larval midgut2 00 of 4 0.23Down
Larval tubule51 34 of 4 5.90Up
Larval hindgut144 144 of 416.58Up
Larval fat body1 00 of 4 0.20Down
Larval trachea2 30 of 4 0.34Down
Larval carcass25 54 of 4 2.90Up
S2 cells (growing)1 00 of 4 0.15Down
Whole fly8 13 of 4

Looking for FBgn0038354. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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