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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038357 through 18771 annotations produced 1 hits



(CG5623):

Annotation Number : CG5623
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038357
Gbrowse : chr3R:11591967-11593160 (-) // 100.0 //
Probeset : 1632176_at
Accessions : protein= NP_650485;, nucleotide= NM_142228;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038357.
BDGP gene expression has embryonic in situ data for CG5623: 6 pix of staining in 1 body parts.
BioGrid reports that CG5623 interacts with CG33261 .
VDRC has 1 RNAi stocks for FBgn0038357 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 01 of 4 0.10Down
Head7 ± 11 of 4 0.20Down
Eye3 ± 00 of 4 0.06Down
Thoracicoabdominal ganglion11 ± 03 of 4 0.20Down
Salivary gland15 ± 20 of 4 0.31Down
Crop11 ± 31 of 4 0.20Down
Midgut13 ± 13 of 4 0.30Down
Tubule10 ± 02 of 4 0.20Down
Hindgut10 ± 11 of 4 0.20Down
Heart2 ± 00 of 4 0.05Down
Fat body16 ± 43 of 4 0.33Down
Ovary5 ± 10 of 4 0.10Down
Testis540 ± 194 of 410.90Up
Male accessory glands12 ± 12 of 4 0.30Down
Virgin spermatheca7 ± 13 of 4 0.15Down
Mated spermatheca13 ± 23 of 4 0.28Down
Adult carcass14 ± 41 of 4 0.30Down
Larval CNS7 ± 12 of 4 0.14Down
Larval Salivary gland7 ± 21 of 4 0.15Down
Larval midgut19 ± 10 of 4 0.39Down
Larval tubule12 ± 22 of 4 0.20Down
Larval hindgut9 ± 20 of 4 0.18Down
Larval fat body67 ± 251 of 4 1.40None
Larval trachea6 ± 12 of 4 0.14Down
Larval carcass14 ± 20 of 4 0.30Down
S2 cells (growing)11 ± 04 of 4 0.23Down
Whole fly49 ± 24 of 4

Looking for FBgn0038357. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime