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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038358 through 18771 annotations produced 1 hits


Annotation Number : CG4525
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038358
Gbrowse : chr3R:11600096-11603364 (+) // 100.0 //
Probeset : 1635131_at
Accessions : protein= NP_650486;, nucleotide= NM_142229;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0038358.
BDGP gene expression has embryonic in situ data for CG4525: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0038358 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 13 of 4 0.80None
Head17 24 of 4 1.90Up
Eye4 20 of 4 0.50None
Thoracicoabdominal ganglion7 11 of 4 0.80None
Salivary gland8 30 of 4 0.88None
Crop6 00 of 4 0.70None
Midgut6 01 of 4 0.70Down
Tubule6 00 of 4 0.70Down
Hindgut4 11 of 4 0.50Down
Heart5 21 of 4 0.61None
Fat body11 21 of 4 1.26None
Ovary3 00 of 4 0.40Down
Testis8 04 of 4 0.90None
Male accessory glands7 10 of 4 0.70None
Virgin spermatheca6 11 of 4 0.65None
Mated spermatheca5 11 of 4 0.61None
Adult carcass23 72 of 4 2.50None
Larval CNS4 10 of 4 0.42Down
Larval Salivary gland3 10 of 4 0.39Down
Larval midgut7 10 of 4 0.76None
Larval tubule6 12 of 4 0.70None
Larval hindgut8 10 of 4 0.92None
Larval fat body8 01 of 4 0.90None
Larval trachea4 10 of 4 0.43Down
Larval carcass11 23 of 4 1.25None
S2 cells (growing)7 03 of 4 0.78None
Whole fly9 11 of 4

Looking for FBgn0038358. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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