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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038359 through 18771 annotations produced 1 hits



(CG5614):

Annotation Number : CG5614
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038359
Gbrowse : chr3R:11605526-11606708 (+) // 100.0 //
Probeset : 1635366_at
Accessions : protein= NP_650487;, nucleotide= NM_142230;
FlyMine data for FBgn0038359.
VDRC has 1 RNAi stocks for FBgn0038359 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye2 10 of 4 0.02Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland7 30 of 4 0.05Down
Crop0 00 of 4 0.00Down
Midgut0 00 of 4 0.00Down
Tubule0 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart2 10 of 4 0.02Down
Fat body0 00 of 4 0.01Down
Ovary0 00 of 4 0.00Down
Testis1414 674 of 410.20Up
Male accessory glands0 00 of 4 0.00Down
Virgin spermatheca0 00 of 4 0.01Down
Mated spermatheca1 00 of 4 0.01Down
Adult carcass1 00 of 4 0.00Down
Larval CNS0 00 of 4 0.00Down
Larval Salivary gland2 10 of 4 0.01Down
Larval midgut3 10 of 4 0.02Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.01Down
Larval fat body155 872 of 4 1.10None
Larval trachea7 121 of 4 0.05Down
Larval carcass1 00 of 4 0.01Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly139 164 of 4

Looking for FBgn0038359. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime