FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038381 through 18771 annotations produced 2 hits

(CG3303):

Annotation Number : CG3303
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038381
Gbrowse : chr3R:11734155-11736090 (+) // 100.0 //
Probeset : 1634396_at
Accessions : protein= NP_650508;, nucleotide= NM_142251;
Interpro : 0004252 // serine-type endopeptidase activity // inferred from sequence or structural similarity /// 0005515 // protein
FlyMine data for FBgn0038381.
BDGP gene expression has embryonic in situ data for CG3303: 19 pix of staining in 5 body parts.
VDRC has 6 RNAi stocks for FBgn0038381 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	75 ± 4	4 of 4	0.50	Down
Head	141 ± 4	4 of 4	0.90	Down
Eye	106 ± 1	4 of 4	0.69	Down
Thoracicoabdominal ganglion	94 ± 2	4 of 4	0.60	Down
Salivary gland	42 ± 4	3 of 4	0.28	Down
Crop	259 ± 5	4 of 4	1.70	Up
Midgut	30 ± 3	4 of 4	0.20	Down
Tubule	428 ± 47	4 of 4	2.80	Up
Hindgut	165 ± 4	4 of 4	1.10	None
Heart	97 ± 5	4 of 4	0.63	Down
Fat body	25 ± 7	4 of 4	0.17	Down
Ovary	276 ± 3	4 of 4	1.80	Up
Testis	18 ± 0	4 of 4	0.10	Down
Male accessory glands	25 ± 2	3 of 4	0.20	Down
Virgin spermatheca	69 ± 3	4 of 4	0.45	Down
Mated spermatheca	81 ± 6	4 of 4	0.53	Down
Adult carcass	79 ± 2	4 of 4	0.50	Down
Larval CNS	149 ± 12	4 of 4	0.97	None
Larval Salivary gland	202 ± 12	4 of 4	1.31	Up
Larval midgut	40 ± 1	4 of 4	0.26	Down
Larval tubule	191 ± 8	4 of 4	1.20	Up
Larval hindgut	193 ± 6	4 of 4	1.25	Up
Larval fat body	16 ± 1	2 of 4	0.10	Down
Larval trachea	631 ± 59	4 of 4	4.07	Up
Larval carcass	213 ± 10	4 of 4	1.38	Up
S2 cells (growing)	263 ± 4	4 of 4	1.70	Up
Whole fly	154 ± 2	4 of 4

/// (CG3303 /// CR31292):

Annotation Number : CG31292
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038381 /// FBgn0051292
Gbrowse : chr3R:11734160-11734664 (+) // 100.0 // /// chr3R:11731968-11732472 (+) // 100.0 // /// chrUextra:531849-532353 (-) // 100.0 //
Probeset : 1632213_s_at
Accessions : protein= NP_650508; /// NP_732084;, nucleotide= NM_142251; /// NM_169681;
Interpro : 0004252 // serine-type endopeptidase activity // inferred from sequence or structural similarity /// 0005515 // protein
FlyMine data for FBgn0038381 /// FBgn0051292.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	27 ± 0	4 of 4	0.40	Down
Head	48 ± 4	4 of 4	0.80	None
Eye	52 ± 4	4 of 4	0.83	None
Thoracicoabdominal ganglion	24 ± 4	4 of 4	0.40	Down
Salivary gland	16 ± 3	1 of 4	0.26	Down
Crop	131 ± 7	4 of 4	2.10	Up
Midgut	6 ± 1	0 of 4	0.10	Down
Tubule	48 ± 6	4 of 4	0.80	Down
Hindgut	77 ± 5	4 of 4	1.20	None
Heart	28 ± 3	4 of 4	0.46	Down
Fat body	3 ± 2	0 of 4	0.06	Down
Ovary	124 ± 1	4 of 4	2.00	Up
Testis	6 ± 0	1 of 4	0.10	Down
Male accessory glands	2 ± 1	0 of 4	0.00	Down
Virgin spermatheca	2 ± 1	0 of 4	0.04	Down
Mated spermatheca	3 ± 1	0 of 4	0.05	Down
Adult carcass	30 ± 2	4 of 4	0.50	Down
Larval CNS	45 ± 3	4 of 4	0.72	None
Larval Salivary gland	56 ± 9	4 of 4	0.90	None
Larval midgut	6 ± 1	0 of 4	0.10	Down
Larval tubule	95 ± 8	4 of 4	1.50	Up
Larval hindgut	60 ± 3	4 of 4	0.97	None
Larval fat body	6 ± 1	1 of 4	0.10	Down
Larval trachea	271 ± 34	4 of 4	4.32	Up
Larval carcass	45 ± 4	4 of 4	0.72	None
S2 cells (growing)	167 ± 4	4 of 4	2.67	Up
Whole fly	62 ± 7	4 of 4

Looking for FBgn0038381. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720