FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038385 through 18771 annotations produced 1 hits

(CG4221):

Annotation Number : CG4221
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038385
Gbrowse : chr3R:11746634-11758614 (+) // 100.0 //
Probeset : 1625473_at
Accessions : protein= NP_650512;, nucleotide= NM_142255;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0038385.
BDGP gene expression has embryonic in situ data for CG4221: 46 pix of staining in 16 body parts.
TRiP has 1 RNAi stocks for FBgn0038385 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038385 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 1	0 of 4	0.90	None
Head	23 ± 0	4 of 4	2.80	Up
Eye	51 ± 4	4 of 4	6.07	Up
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.50	None
Salivary gland	16 ± 2	0 of 4	1.96	None
Crop	49 ± 2	4 of 4	5.80	Up
Midgut	3 ± 1	0 of 4	0.40	None
Tubule	3 ± 0	0 of 4	0.40	Down
Hindgut	24 ± 3	4 of 4	2.80	Up
Heart	2 ± 0	0 of 4	0.25	None
Fat body	2 ± 3	0 of 4	0.32	None
Ovary	4 ± 0	0 of 4	0.50	None
Testis	4 ± 1	0 of 4	0.50	None
Male accessory glands	7 ± 2	0 of 4	0.90	None
Virgin spermatheca	4 ± 1	0 of 4	0.54	None
Mated spermatheca	3 ± 1	0 of 4	0.36	None
Adult carcass	12 ± 1	0 of 4	1.50	None
Larval CNS	19 ± 2	4 of 4	2.30	Up
Larval Salivary gland	12 ± 4	0 of 4	1.46	None
Larval midgut	4 ± 3	0 of 4	0.54	None
Larval tubule	1 ± 0	0 of 4	0.10	None
Larval hindgut	22 ± 1	4 of 4	2.61	Up
Larval fat body	4 ± 1	0 of 4	0.50	None
Larval trachea	76 ± 5	4 of 4	8.94	Up
Larval carcass	43 ± 1	4 of 4	5.06	Up
S2 cells (growing)	2 ± 0	0 of 4	0.29	None
Whole fly	8 ± 2	1 of 4

Looking for FBgn0038385. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720