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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038386 through 18771 annotations produced 1 hits


(CG5478):

Annotation Number : CG5478
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038386
Gbrowse : chr3R:11758421-11759456 (-) // 100.0 //
Probeset : 1639327_at
Accessions : protein= NP_650513;, nucleotide= NM_142256;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038386.
BDGP gene expression has embryonic in situ data for CG5478: 4 pix of staining in 1 body parts.
BioGrid reports that CG5478 interacts with CG6629 CG7967 CG8529 .
VDRC has 2 RNAi stocks for FBgn0038386 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head4 ± 10 of 4 0.10Down
Eye2 ± 10 of 4 0.08Down
Thoracicoabdominal ganglion5 ± 20 of 4 0.20Down
Salivary gland15 ± 41 of 4 0.52Down
Crop5 ± 20 of 4 0.20Down
Midgut4 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut9 ± 20 of 4 0.30Down
Heart3 ± 00 of 4 0.10Down
Fat body6 ± 40 of 4 0.20Down
Ovary2 ± 10 of 4 0.10Down
Testis238 ± 14 of 4 7.80Up
Male accessory glands7 ± 10 of 4 0.20Down
Virgin spermatheca3 ± 10 of 4 0.11Down
Mated spermatheca3 ± 10 of 4 0.11Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS5 ± 00 of 4 0.16Down
Larval Salivary gland7 ± 20 of 4 0.24Down
Larval midgut4 ± 00 of 4 0.16Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut5 ± 10 of 4 0.18Down
Larval fat body21 ± 151 of 4 0.70None
Larval trachea2 ± 10 of 4 0.09Down
Larval carcass5 ± 10 of 4 0.19Down
S2 cells (growing)1 ± 00 of 4 0.06Down
Whole fly30 ± 14 of 4

Looking for FBgn0038386. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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