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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038389 through 18771 annotations produced 1 hits



(CG5516):

Annotation Number : CG5516
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038389
Gbrowse : chr3R:11789609-11790479 (+) // 100.0 //
Probeset : 1626986_at
Accessions : protein= NP_650515;, nucleotide= NM_142258;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0038389.
BDGP gene expression has embryonic in situ data for CG5516: 4 pix of staining in 1 body parts.
BioGrid reports that CG5516 interacts with CG8831 CG9893 .
VDRC has 7 RNAi stocks for FBgn0038389 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain144 ± 14 of 4 1.30Up
Head93 ± 24 of 4 0.90Down
Eye163 ± 44 of 4 1.48Up
Thoracicoabdominal ganglion104 ± 44 of 4 0.90None
Salivary gland54 ± 54 of 4 0.49Down
Crop78 ± 44 of 4 0.70Down
Midgut56 ± 14 of 4 0.50Down
Tubule29 ± 23 of 4 0.30Down
Hindgut72 ± 14 of 4 0.70Down
Heart84 ± 34 of 4 0.77Down
Fat body57 ± 74 of 4 0.52Down
Ovary236 ± 14 of 4 2.10Up
Testis126 ± 44 of 4 1.10Up
Male accessory glands99 ± 34 of 4 0.90Down
Virgin spermatheca35 ± 14 of 4 0.32Down
Mated spermatheca40 ± 34 of 4 0.37Down
Adult carcass56 ± 24 of 4 0.50Down
Larval CNS173 ± 64 of 4 1.58Up
Larval Salivary gland95 ± 44 of 4 0.86Down
Larval midgut46 ± 34 of 4 0.42Down
Larval tubule79 ± 44 of 4 0.70Down
Larval hindgut62 ± 24 of 4 0.57Down
Larval fat body104 ± 64 of 4 1.00None
Larval trachea150 ± 134 of 4 1.36Up
Larval carcass63 ± 34 of 4 0.58Down
S2 cells (growing)88 ± 04 of 4 0.80Down
Whole fly110 ± 14 of 4

Looking for FBgn0038389. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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