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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038391 through 18771 annotations produced 1 hits


Annotation Number : CG10278
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038391
Gbrowse : chr3R:11837992-11844855 (+) // 100.0 //
Probeset : 1626499_at
Accessions : protein= NP_650516;, nucleotide= NM_142259;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007492 // endoderm development // non-traceable author statem
Interpro : 0005634 // nucleus // non-traceable author statement
FlyMine data for FBgn0038391.
BDGP gene expression has embryonic in situ data for GATAe: 34 pix of staining in 14 body parts.
Homophila reports that CG10278 is a close match (3e-12) to human gene ERYF1;GATA1;GF1;NFE1 (NP_002040), a gene associated with Dyserythropoietic anemia with thrombocytopenia, 300367 (3);Leukemia, megakaryoblastic, of Down syndrome, 190685 (3);Leukemia, megakaryoblastic, with or without Down syndrome, 190685 (3);Macrothrombocytopenia, 300367 (3).
BioGrid reports that CG10278 interacts with CG17524 .
TRiP has 3 RNAi stocks for FBgn0038391 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038391 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head2 10 of 4 0.00Down
Eye1 00 of 4 0.03Down
Thoracicoabdominal ganglion3 00 of 4 0.10Down
Salivary gland8 30 of 4 0.18Down
Crop3 10 of 4 0.10Down
Midgut545 224 of 411.10Up
Tubule546 164 of 411.10Up
Hindgut93 84 of 4 1.90Up
Heart3 10 of 4 0.07Down
Fat body5 30 of 4 0.11Down
Ovary2 00 of 4 0.00Down
Testis3 10 of 4 0.10Down
Male accessory glands5 10 of 4 0.10Down
Virgin spermatheca5 10 of 4 0.12Down
Mated spermatheca1 00 of 4 0.03Down
Adult carcass5 20 of 4 0.10Down
Larval CNS1 00 of 4 0.02Down
Larval Salivary gland5 20 of 4 0.11Down
Larval midgut476 154 of 4 9.72Up
Larval tubule317 134 of 4 6.50Up
Larval hindgut115 34 of 4 2.35Up
Larval fat body1 00 of 4 0.00Down
Larval trachea1 10 of 4 0.04Down
Larval carcass5 10 of 4 0.10Down
S2 cells (growing)7 11 of 4 0.15Down
Whole fly49 94 of 4

Looking for FBgn0038391. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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