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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038394 through 18771 annotations produced 1 hits



(CG10264):

Annotation Number : CG10264
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038394
Gbrowse : chr3R:11869338-11870439 (+) // 100.0 //
Probeset : 1631882_at
Accessions : protein= NP_650518;, nucleotide= NM_142261;
FlyMine data for FBgn0038394.
VDRC has 2 RNAi stocks for FBgn0038394 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.80None
Head1 ± 00 of 4 0.90None
Eye0 ± 00 of 4 0.41None
Thoracicoabdominal ganglion1 ± 10 of 4 1.30None
Salivary gland5 ± 20 of 4 4.93None
Crop2 ± 10 of 4 1.80None
Midgut1 ± 00 of 4 1.30None
Tubule2 ± 00 of 4 1.80None
Hindgut0 ± 00 of 4 0.60None
Heart1 ± 00 of 4 1.37None
Fat body2 ± 10 of 4 2.41None
Ovary1 ± 10 of 4 1.30None
Testis2 ± 10 of 4 2.00None
Male accessory glands2 ± 00 of 4 2.40None
Virgin spermatheca1 ± 00 of 4 1.41None
Mated spermatheca3 ± 00 of 4 3.22Up
Adult carcass3 ± 10 of 4 3.10None
Larval CNS0 ± 00 of 4 0.85None
Larval Salivary gland4 ± 10 of 4 3.98None
Larval midgut0 ± 00 of 4 0.65None
Larval tubule0 ± 00 of 4 0.50None
Larval hindgut0 ± 00 of 4 0.43None
Larval fat body1 ± 00 of 4 1.20None
Larval trachea1 ± 10 of 4 1.52None
Larval carcass0 ± 00 of 4 0.83None
S2 cells (growing)2 ± 00 of 4 1.83None
Whole fly1 ± 00 of 4

Looking for FBgn0038394. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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