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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038396 through 18771 annotations produced 1 hits



(CG5013):

Annotation Number : CG5013
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038396
Gbrowse : chr3R:11875392-11876417 (+) // 100.0 //
Probeset : 1626514_at
Accessions : protein= NP_650520;, nucleotide= NM_142263;
FlyMine data for FBgn0038396.
VDRC has 3 RNAi stocks for FBgn0038396 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 ± 24 of 4 0.40Down
Head51 ± 34 of 4 0.70None
Eye44 ± 34 of 4 0.64Down
Thoracicoabdominal ganglion33 ± 04 of 4 0.50Down
Salivary gland73 ± 64 of 4 1.05None
Crop97 ± 44 of 4 1.40Up
Midgut56 ± 24 of 4 0.80None
Tubule82 ± 64 of 4 1.20Up
Hindgut70 ± 44 of 4 1.00None
Heart75 ± 44 of 4 1.09None
Fat body69 ± 64 of 4 0.99None
Ovary103 ± 44 of 4 1.50Up
Testis61 ± 24 of 4 0.90None
Male accessory glands70 ± 14 of 4 1.00None
Virgin spermatheca121 ± 54 of 4 1.75Up
Mated spermatheca113 ± 44 of 4 1.63Up
Adult carcass60 ± 14 of 4 0.90None
Larval CNS110 ± 64 of 4 1.59Up
Larval Salivary gland66 ± 64 of 4 0.96None
Larval midgut36 ± 44 of 4 0.53Down
Larval tubule107 ± 74 of 4 1.50Up
Larval hindgut52 ± 04 of 4 0.75None
Larval fat body82 ± 24 of 4 1.20None
Larval trachea122 ± 74 of 4 1.77Up
Larval carcass77 ± 64 of 4 1.12None
S2 cells (growing)78 ± 34 of 4 1.13None
Whole fly69 ± 64 of 4

Looking for FBgn0038396. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime