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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0038397 through 18771 annotations produced 1 hits


Annotation Number : CG10185
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038397
Gbrowse : chr3R:11886408-11893234 (-) // 100.0 //
Probeset : 1627074_at
Accessions : protein= NP_650521;, nucleotide= NM_142264;
FlyMine data for FBgn0038397.
VDRC has 2 RNAi stocks for FBgn0038397 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.30None
Head21 23 of 4 6.70Up
Eye2 00 of 4 0.65None
Thoracicoabdominal ganglion2 10 of 4 0.70None
Salivary gland6 50 of 4 2.09None
Crop2 10 of 4 0.80None
Midgut0 00 of 4 0.30None
Tubule1 00 of 4 0.50Down
Hindgut1 00 of 4 0.30None
Heart3 10 of 4 1.16None
Fat body1 00 of 4 0.34None
Ovary0 00 of 4 0.30None
Testis7 11 of 4 2.50None
Male accessory glands1 00 of 4 0.40None
Virgin spermatheca2 10 of 4 0.72None
Mated spermatheca1 00 of 4 0.48None
Adult carcass4 20 of 4 1.30None
Larval CNS0 00 of 4 0.20None
Larval Salivary gland1 00 of 4 0.43None
Larval midgut1 00 of 4 0.45None
Larval tubule0 00 of 4 0.20None
Larval hindgut0 00 of 4 0.23None
Larval fat body4 10 of 4 1.40None
Larval trachea2 20 of 4 0.71None
Larval carcass2 00 of 4 0.74None
S2 cells (growing)1 00 of 4 0.43None
Whole fly3 10 of 4

Looking for FBgn0038397. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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