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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038401 through 18771 annotations produced 1 hits



(CG5916):

Annotation Number : CG5916
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038401
Gbrowse : chr3R:11972740-11975115 (+) // 100.0 //
Probeset : 1639728_at
Accessions : protein= NP_650524;, nucleotide= NM_142267;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005097 // Rab GTPase activator activity // inferred from electronic annotation
FlyMine data for FBgn0038401.
BDGP gene expression has embryonic in situ data for CG5916: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0038401 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain204 24 of 4 1.60Up
Head80 74 of 4 0.60Down
Eye49 24 of 4 0.38Down
Thoracicoabdominal ganglion147 124 of 4 1.10None
Salivary gland26 43 of 4 0.21Down
Crop56 44 of 4 0.40Down
Midgut83 24 of 4 0.70Down
Tubule51 34 of 4 0.40Down
Hindgut40 14 of 4 0.30Down
Heart26 14 of 4 0.20Down
Fat body44 74 of 4 0.35Down
Ovary319 84 of 4 2.50Up
Testis45 14 of 4 0.40Down
Male accessory glands19 03 of 4 0.20Down
Virgin spermatheca24 14 of 4 0.19Down
Mated spermatheca23 14 of 4 0.18Down
Adult carcass37 44 of 4 0.30Down
Larval CNS134 194 of 4 1.05None
Larval Salivary gland33 04 of 4 0.26Down
Larval midgut110 74 of 4 0.87None
Larval tubule88 24 of 4 0.70Down
Larval hindgut53 14 of 4 0.42Down
Larval fat body66 24 of 4 0.50Down
Larval trachea37 74 of 4 0.30Down
Larval carcass30 24 of 4 0.24Down
S2 cells (growing)105 44 of 4 0.83Down
Whole fly128 44 of 4

Looking for FBgn0038401. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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