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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038402 through 18771 annotations produced 1 hits



48 related 2 (Fer2):

Annotation Number : CG5952
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038402
Gbrowse : chr3R:11975509-11976942 (-) // 100.0 //
Probeset : 1639281_at
Accessions : protein= NP_524376;, nucleotide= NM_079652;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0038402.
Homophila reports that CG5952 is a close match (2e-16) to human gene PTF1A (NP_835455), a gene associated with Diabetes mellitus, permanent neonatal, with cerebellar agenesis, 609069 (3).
TRiP has 1 RNAi stocks for FBgn0038402 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038402 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 14 of 4 9.30Up
Head15 01 of 4 3.00Up
Eye5 10 of 4 0.94None
Thoracicoabdominal ganglion35 14 of 4 6.60Up
Salivary gland9 30 of 4 1.85None
Crop5 20 of 4 1.00None
Midgut2 00 of 4 0.40None
Tubule1 00 of 4 0.30Down
Hindgut5 10 of 4 1.00None
Heart5 10 of 4 1.05None
Fat body5 30 of 4 0.93None
Ovary4 10 of 4 0.80None
Testis1 00 of 4 0.20Down
Male accessory glands11 20 of 4 2.10None
Virgin spermatheca5 00 of 4 1.02None
Mated spermatheca6 20 of 4 1.12None
Adult carcass7 10 of 4 1.30None
Larval CNS133 64 of 425.12Up
Larval Salivary gland9 30 of 4 1.75None
Larval midgut7 10 of 4 1.47None
Larval tubule3 10 of 4 0.70None
Larval hindgut5 10 of 4 1.08None
Larval fat body5 10 of 4 0.90None
Larval trachea4 10 of 4 0.75None
Larval carcass8 10 of 4 1.65None
S2 cells (growing)7 10 of 4 1.34None
Whole fly5 10 of 4

Looking for FBgn0038402. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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