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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038405 through 18771 annotations produced 1 hits



(CG8927):

Annotation Number : CG8927
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038405
Gbrowse : chr3R:12006741-12011958 (+) // 100.0 //
Probeset : 1639979_at
Accessions : protein= NP_001034056; /// NP_650527;, nucleotide= NM_001038967; /// NM_142270;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0042302 // structural constituent of cuticle // inf
FlyMine data for FBgn0038405.
BDGP gene expression has embryonic in situ data for CG8927: 13 pix of staining in 2 body parts.
VDRC has 1 RNAi stocks for FBgn0038405 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.30Down
Head21 24 of 4 2.00Up
Eye46 74 of 4 4.51Up
Thoracicoabdominal ganglion3 10 of 4 0.40Down
Salivary gland52 64 of 4 5.09Up
Crop7 00 of 4 0.70Down
Midgut7 10 of 4 0.70None
Tubule3 00 of 4 0.30Down
Hindgut6 00 of 4 0.60Down
Heart7 21 of 4 0.74None
Fat body7 30 of 4 0.68None
Ovary6 10 of 4 0.60Down
Testis104 54 of 410.10Up
Male accessory glands6 10 of 4 0.70None
Virgin spermatheca6 10 of 4 0.63None
Mated spermatheca2 10 of 4 0.27Down
Adult carcass8 21 of 4 0.80None
Larval CNS3 10 of 4 0.30Down
Larval Salivary gland92 134 of 4 8.96Up
Larval midgut6 10 of 4 0.66None
Larval tubule3 10 of 4 0.40Down
Larval hindgut12 14 of 4 1.19None
Larval fat body23 92 of 4 2.30None
Larval trachea2686 4404 of 4259.56Up
Larval carcass45 14 of 4 4.44Up
S2 cells (growing)2 00 of 4 0.26Down
Whole fly10 04 of 4

Looking for FBgn0038405. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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