FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0038407 through 18771 annotations produced 1 hits

(CG6126):

Annotation Number : CG6126
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038407
Gbrowse : chr3R:12023723-12028802 (-) // 100.0 //
Probeset : 1634767_at
Accessions : protein= NP_650528;, nucleotide= NM_142271;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0038407.
BDGP gene expression has embryonic in situ data for CG6126: 26 pix of staining in 15 body parts.
Homophila reports that CG6126 is a close match (7e-31) to human gene OAT4L;SLC22A12;URAT1 (NP_700357), a gene associated with Hypouricemia, renal, 220150 (3).
BioGrid reports that CG6126 interacts with CG6913 CG9695 .
VDRC has 1 RNAi stocks for FBgn0038407 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	729 ± 15	4 of 4	2.40	Up
Head	873 ± 86	4 of 4	2.80	Up
Eye	462 ± 16	4 of 4	1.49	Up
Thoracicoabdominal ganglion	1050 ± 59	4 of 4	3.40	Up
Salivary gland	145 ± 8	4 of 4	0.47	Down
Crop	58 ± 4	4 of 4	0.20	Down
Midgut	134 ± 5	4 of 4	0.40	Down
Tubule	2316 ± 406	4 of 4	7.50	Up
Hindgut	1177 ± 29	4 of 4	3.80	Up
Heart	533 ± 61	4 of 4	1.72	Up
Fat body	594 ± 82	4 of 4	1.92	Up
Ovary	316 ± 8	4 of 4	1.00	None
Testis	8 ± 1	0 of 4	0.00	Down
Male accessory glands	72 ± 3	4 of 4	0.20	Down
Virgin spermatheca	179 ± 9	4 of 4	0.58	Down
Mated spermatheca	227 ± 10	4 of 4	0.73	Down
Adult carcass	625 ± 41	4 of 4	2.00	Up
Larval CNS	279 ± 23	4 of 4	0.90	None
Larval Salivary gland	24 ± 2	4 of 4	0.08	Down
Larval midgut	438 ± 49	4 of 4	1.42	None
Larval tubule	2013 ± 107	4 of 4	6.50	Up
Larval hindgut	779 ± 46	4 of 4	2.52	Up
Larval fat body	78 ± 17	4 of 4	0.30	Down
Larval trachea	443 ± 77	4 of 4	1.43	Up
Larval carcass	594 ± 52	4 of 4	1.92	Up
S2 cells (growing)	84 ± 2	4 of 4	0.27	Down
Whole fly	309 ± 18	4 of 4

Looking for FBgn0038407. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720