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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038412 through 18771 annotations produced 1 hits



Zinc/iron regulated transporter-related protein 3 (Zip3):

Annotation Number : CG6898
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038412
Gbrowse : chr3R:12131484-12134424 (+) // 100.0 //
Probeset : 1637577_at
Accessions : protein= NP_536747;, nucleotide= NM_080499;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation /// 0046873 // metal ion
FlyMine data for FBgn0038412.
TRiP has 1 RNAi stocks for FBgn0038412 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038412 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.20Down
Head60 74 of 4 2.10Up
Eye5 20 of 4 0.19Down
Thoracicoabdominal ganglion1 10 of 4 0.10Down
Salivary gland14 40 of 4 0.52Down
Crop39 34 of 4 1.40None
Midgut68 10 of 4 2.40Up
Tubule81 194 of 4 2.80Up
Hindgut350 144 of 412.10Up
Heart7 10 of 4 0.26Down
Fat body14 30 of 4 0.50Down
Ovary18 12 of 4 0.60Down
Testis20 14 of 4 0.70Down
Male accessory glands6 10 of 4 0.20Down
Virgin spermatheca6 00 of 4 0.23Down
Mated spermatheca40 122 of 4 1.39None
Adult carcass39 41 of 4 1.40None
Larval CNS4 00 of 4 0.14Down
Larval Salivary gland7 10 of 4 0.26Down
Larval midgut121 191 of 4 4.20Up
Larval tubule246 494 of 4 8.50Up
Larval hindgut251 354 of 4 8.71Up
Larval fat body11 20 of 4 0.40Down
Larval trachea29 62 of 4 1.03None
Larval carcass102 64 of 4 3.55Up
S2 cells (growing)9 10 of 4 0.32Down
Whole fly28 10 of 4

Looking for FBgn0038412. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime