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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038414 through 18771 annotations produced 1 hits



(CG6901):

Annotation Number : CG6901
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038414
Gbrowse : chr3R:12149184-12150775 (+) // 100.0 //
Probeset : 1635674_at
Accessions : protein= NP_650531;, nucleotide= NM_142274;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation
FlyMine data for FBgn0038414.
VDRC has 2 RNAi stocks for FBgn0038414 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.20Down
Head2 00 of 4 0.20Down
Eye3 00 of 4 0.30Down
Thoracicoabdominal ganglion4 30 of 4 0.40None
Salivary gland15 10 of 4 1.35None
Crop4 20 of 4 0.40Down
Midgut261 104 of 422.80Up
Tubule7 01 of 4 0.60Down
Hindgut6 21 of 4 0.50None
Heart6 13 of 4 0.56Down
Fat body10 24 of 4 0.87None
Ovary2 00 of 4 0.20Down
Testis4 01 of 4 0.40Down
Male accessory glands8 20 of 4 0.70None
Virgin spermatheca6 21 of 4 0.54None
Mated spermatheca5 10 of 4 0.48Down
Adult carcass6 30 of 4 0.50None
Larval CNS4 21 of 4 0.38Down
Larval Salivary gland5 10 of 4 0.45Down
Larval midgut589 324 of 451.27Up
Larval tubule6 11 of 4 0.50Down
Larval hindgut6 04 of 4 0.60Down
Larval fat body9 20 of 4 0.80None
Larval trachea2 10 of 4 0.18Down
Larval carcass5 11 of 4 0.50Down
S2 cells (growing)5 02 of 4 0.47Down
Whole fly11 13 of 4

Looking for FBgn0038414. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime