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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0038418 through 18771 annotations produced 1 hits



poils au dos (pad):

Annotation Number : CG10309
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038418
Gbrowse : chr3R:12168115-12171126 (+) // 100.0 //
Probeset : 1635101_at
Accessions : protein= NP_650534;, nucleotide= NM_142277;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0038418.
Homophila reports that CG10309 is a close match (1e-11) to human gene AITD3;ZFAT1;ZNF406 (NP_065914), a gene associated with {Autoimmune thyroid disease, susceptibility to, 3}, 608175 (3).
TRiP has 1 RNAi stocks for FBgn0038418 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038418 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 ± 14 of 4 1.00None
Head14 ± 12 of 4 0.50Down
Eye9 ± 13 of 4 0.33Down
Thoracicoabdominal ganglion14 ± 24 of 4 0.50Down
Salivary gland17 ± 42 of 4 0.59None
Crop11 ± 21 of 4 0.40Down
Midgut11 ± 10 of 4 0.40Down
Tubule8 ± 10 of 4 0.30Down
Hindgut15 ± 14 of 4 0.50Down
Heart9 ± 10 of 4 0.31Down
Fat body10 ± 21 of 4 0.37Down
Ovary107 ± 44 of 4 3.70Up
Testis17 ± 14 of 4 0.60Down
Male accessory glands18 ± 33 of 4 0.60None
Virgin spermatheca8 ± 01 of 4 0.30Down
Mated spermatheca11 ± 11 of 4 0.41Down
Adult carcass18 ± 50 of 4 0.60None
Larval CNS39 ± 24 of 4 1.35Up
Larval Salivary gland17 ± 14 of 4 0.60Down
Larval midgut5 ± 00 of 4 0.19Down
Larval tubule14 ± 22 of 4 0.50Down
Larval hindgut9 ± 01 of 4 0.32Down
Larval fat body12 ± 21 of 4 0.40Down
Larval trachea12 ± 24 of 4 0.43Down
Larval carcass9 ± 11 of 4 0.34Down
S2 cells (growing)33 ± 24 of 4 1.15None
Whole fly29 ± 34 of 4

Looking for FBgn0038418. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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